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nvbio::alndiff::DebugAlignmentStream Struct Reference

Detailed description

Definition at line 34 of file alignment_dbg.cpp.

Inheritance diagram for nvbio::alndiff::DebugAlignmentStream:


struct  Info

Public Methods

 DebugAlignmentStream (const char *file_name)
bool is_ok ()
uint32 next_batch (const uint32 count, Alignment *batch)
- Public Methods inherited from nvbio::alndiff::AlignmentStream
virtual ~AlignmentStream ()

Public Members

gzFile m_file

Constructor & Destructor Documentation

nvbio::alndiff::DebugAlignmentStream::DebugAlignmentStream ( const char *  file_name)

Definition at line 60 of file alignment_dbg.cpp.

Member Function Documentation

bool nvbio::alndiff::DebugAlignmentStream::is_ok ( void  )

return if the stream is ok

Reimplemented from nvbio::alndiff::AlignmentStream.

Definition at line 67 of file alignment_dbg.cpp.

uint32 nvbio::alndiff::DebugAlignmentStream::next_batch ( const uint32  count,
Alignment batch 

get the next batch

Reimplemented from nvbio::alndiff::AlignmentStream.

Definition at line 71 of file alignment_dbg.cpp.

Member Data Documentation

gzFile nvbio::alndiff::DebugAlignmentStream::m_file

Definition at line 121 of file alignment_dbg.cpp.

The documentation for this struct was generated from the following file: