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nvbio::bowtie2::cuda::detail::AlignmentStreamContext< TRACEBACK_STREAM > Struct Template Reference

Detailed description

struct nvbio::bowtie2::cuda::detail::AlignmentStreamContext< TRACEBACK_STREAM >

Base class for the traceback alignment contexts

Definition at line 255 of file alignment_utils.h.

#include <alignment_utils.h>

Public Methods


Public Members

io::Cigar cigar [1024]
 output CIGAR storage More...
Backtracker< io::Cigar * > backtracer
 output alignment backtracer More...
aln::Alignment< int32alignment
 output alignment More...

Constructor & Destructor Documentation


Definition at line 264 of file alignment_utils.h.

Member Data Documentation

output alignment

Definition at line 259 of file alignment_utils.h.

output alignment backtracer

Definition at line 258 of file alignment_utils.h.

output CIGAR storage

Definition at line 257 of file alignment_utils.h.

The documentation for this struct was generated from the following file: