nvbio::cuda::DeviceBWTConfig< BUCKETING_BITS_T, SYMBOL_SIZE, BIG_ENDIAN, storage_type > Struct Template Reference

Detailed description

template< uint32 BUCKETING_BITS_T, uint32 SYMBOL_SIZE, bool BIG_ENDIAN, typename storage_type>
struct nvbio::cuda::DeviceBWTConfig< BUCKETING_BITS_T, SYMBOL_SIZE, BIG_ENDIAN, storage_type >

Definition at line 312 of file sufsort_inl.h.

#include <sufsort_inl.h>

Public Types
typedef std::iterator_traits < storage_type >::value_type	word_type
typedef ConcatenatedStringSet < PackedStream< storage_type, uint8, SYMBOL_SIZE, BIG_ENDIAN, uint64 >, uint64 * >	string_set_type
typedef priv::DeviceStringSetRadices < string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS >	string_set_handler
typedef priv::word_selector < BUCKETING_BITS >::type	bucket_type
typedef priv::DeviceSetSuffixBucketer < SYMBOL_SIZE, BIG_ENDIAN, storage_type, BUCKETING_BITS, DOLLAR_BITS, bucket_type, device_tag >	suffix_bucketer

Static Public Members
static const uint32	WORD_BITS = uint32( 8u * sizeof(word_type) )
static const uint32	DOLLAR_BITS = WORD_BITS <= 32 ? 4 : 5
static const uint32	BUCKETING_BITS = BUCKETING_BITS_T

Member Typedef Documentation

template<uint32 BUCKETING_BITS_T, uint32 SYMBOL_SIZE, bool BIG_ENDIAN, typename storage_type >

typedef priv::word_selector<BUCKETING_BITS>::type nvbio::cuda::DeviceBWTConfig< BUCKETING_BITS_T, SYMBOL_SIZE, BIG_ENDIAN, storage_type >::bucket_type

Definition at line 326 of file sufsort_inl.h.

template<uint32 BUCKETING_BITS_T, uint32 SYMBOL_SIZE, bool BIG_ENDIAN, typename storage_type >

typedef priv::DeviceStringSetRadices<string_set_type,SYMBOL_SIZE,DOLLAR_BITS,WORD_BITS> nvbio::cuda::DeviceBWTConfig< BUCKETING_BITS_T, SYMBOL_SIZE, BIG_ENDIAN, storage_type >::string_set_handler

Definition at line 324 of file sufsort_inl.h.

template<uint32 BUCKETING_BITS_T, uint32 SYMBOL_SIZE, bool BIG_ENDIAN, typename storage_type >

typedef ConcatenatedStringSet< PackedStream<storage_type,uint8,SYMBOL_SIZE,BIG_ENDIAN,uint64>, uint64*> nvbio::cuda::DeviceBWTConfig< BUCKETING_BITS_T, SYMBOL_SIZE, BIG_ENDIAN, storage_type >::string_set_type

Definition at line 322 of file sufsort_inl.h.

template<uint32 BUCKETING_BITS_T, uint32 SYMBOL_SIZE, bool BIG_ENDIAN, typename storage_type >

typedef priv::DeviceSetSuffixBucketer< SYMBOL_SIZE,BIG_ENDIAN,storage_type, BUCKETING_BITS,DOLLAR_BITS,bucket_type, device_tag> nvbio::cuda::DeviceBWTConfig< BUCKETING_BITS_T, SYMBOL_SIZE, BIG_ENDIAN, storage_type >::suffix_bucketer

Definition at line 330 of file sufsort_inl.h.

template<uint32 BUCKETING_BITS_T, uint32 SYMBOL_SIZE, bool BIG_ENDIAN, typename storage_type >

typedef std::iterator_traits<storage_type>::value_type nvbio::cuda::DeviceBWTConfig< BUCKETING_BITS_T, SYMBOL_SIZE, BIG_ENDIAN, storage_type >::word_type

Definition at line 314 of file sufsort_inl.h.

Member Data Documentation

template<uint32 BUCKETING_BITS_T, uint32 SYMBOL_SIZE, bool BIG_ENDIAN, typename storage_type >

const uint32 nvbio::cuda::DeviceBWTConfig< BUCKETING_BITS_T, SYMBOL_SIZE, BIG_ENDIAN, storage_type >::BUCKETING_BITS = BUCKETING_BITS_T

static

Definition at line 318 of file sufsort_inl.h.

template<uint32 BUCKETING_BITS_T, uint32 SYMBOL_SIZE, bool BIG_ENDIAN, typename storage_type >

const uint32 nvbio::cuda::DeviceBWTConfig< BUCKETING_BITS_T, SYMBOL_SIZE, BIG_ENDIAN, storage_type >::DOLLAR_BITS = WORD_BITS <= 32 ? 4 : 5

static

Definition at line 317 of file sufsort_inl.h.

template<uint32 BUCKETING_BITS_T, uint32 SYMBOL_SIZE, bool BIG_ENDIAN, typename storage_type >

const uint32 nvbio::cuda::DeviceBWTConfig< BUCKETING_BITS_T, SYMBOL_SIZE, BIG_ENDIAN, storage_type >::WORD_BITS = uint32( 8u * sizeof(word_type) )

static

Definition at line 316 of file sufsort_inl.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvbio/sufsort/sufsort_inl.h