nvbio::aln::priv::banded Namespace Reference

Classes
struct	GotohScoringContext
struct	GotohCheckpointedScoringContext
struct	GotohCheckpointContext
struct	GotohSubmatrixContext
struct	gotoh_alignment_score_dispatch
struct	SmithWatermanScoringContext
struct	SmithWatermanCheckpointedScoringContext
struct	SmithWatermanCheckpointContext
struct	SmithWatermanSubmatrixContext
struct	sw_alignment_score_dispatch

Functions
template<uint32 BAND_LEN, AlignmentType TYPE, typename H_band_type , typename F_band_type , typename scoring_type , typename score_type >
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void	init_row_zero (H_band_type &H_band, F_band_type &F_band, const scoring_type &scoring, const score_type infimum)
template<uint32 BAND_LEN, AlignmentType TYPE, typename band_type , typename scoring_type , typename score_type >
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void	init_row_zero (band_type &band, const scoring_type &scoring, const score_type infimum)