vcf_sweep.c File Reference

#include "htslib/vcf_sweep.h"
#include "htslib/bgzf.h"

Go to the source code of this file.

Classes
struct	_bcf_sweep_t

Macros
#define	SW_FWD   0
#define	SW_BWD   1

Functions
BGZF *	hts_get_bgzfp (htsFile *fp)
int	hts_useek (htsFile *file, long uoffset, int where)
long	hts_utell (htsFile *file)
bcf_sweep_t *	bcf_sweep_init (const char *fname)
void	bcf_empty1 (bcf1_t *v)
void	bcf_sweep_destroy (bcf_sweep_t *sw)
bcf1_t *	bcf_sweep_fwd (bcf_sweep_t *sw)
bcf1_t *	bcf_sweep_bwd (bcf_sweep_t *sw)
bcf_hdr_t *	bcf_sweep_hdr (bcf_sweep_t *sw)

Macro Definition Documentation

#define SW_BWD   1

Definition at line 5 of file vcf_sweep.c.

#define SW_FWD   0

Definition at line 4 of file vcf_sweep.c.

Function Documentation

void bcf_empty1

(

bcf1_t *

v)

Definition at line 765 of file vcf.c.

bcf1_t* bcf_sweep_bwd

(

bcf_sweep_t *

sw)

Definition at line 149 of file vcf_sweep.c.

void bcf_sweep_destroy

(

bcf_sweep_t *

sw)

Definition at line 96 of file vcf_sweep.c.

bcf1_t* bcf_sweep_fwd

(

bcf_sweep_t *

sw)

Definition at line 120 of file vcf_sweep.c.

bcf_hdr_t* bcf_sweep_hdr

(

bcf_sweep_t *

sw)

Definition at line 157 of file vcf_sweep.c.

bcf_sweep_t* bcf_sweep_init

(

const char *

fname)

Definition at line 81 of file vcf_sweep.c.

BGZF* hts_get_bgzfp

(

htsFile *

fp)

Definition at line 259 of file hts.c.

int hts_useek	(	htsFile *	file,
		long	uoffset,
		int	where
	)

Definition at line 266 of file hts.c.

long hts_utell

(

htsFile *

file)

Definition at line 277 of file hts.c.