InputStage Struct Reference

Detailed description

A small class implementing an nvbio::Pipeline stage reading sequence batches from a file

A small class implementing a Pipeline stage reading sequence batches from a file

Definition at line 79 of file input_thread.h.

#include <input_thread.h>

Public Types
typedef void	argument_type
typedef io::SequenceDataHost	return_type
typedef void	argument_type
typedef io::SequenceDataHost	return_type

Public Methods
	InputStage ()
	InputStage (InputStageData *data)
bool	process (PipelineContext &context)
	InputStage (io::SequenceDataStream *file, const uint32 max_strings, const uint32 max_bps)
bool	process (PipelineContext &context)

Public Members
InputStageData *	m_data
io::SequenceDataStream *	m_file
uint32	m_max_strings
uint32	m_max_bps
float	m_time

Member Typedef Documentation

typedef void InputStage::argument_type

Definition at line 48 of file input_thread.h.

typedef void InputStage::argument_type

Definition at line 81 of file input_thread.h.

typedef io::SequenceDataHost InputStage::return_type

Definition at line 49 of file input_thread.h.

typedef io::SequenceDataHost InputStage::return_type

Definition at line 82 of file input_thread.h.

Constructor & Destructor Documentation

InputStage::InputStage ( )

inline

constructor

Parameters

file	input sequence file
max_strings	maximum number of strings per batch
max_bps	maximum number of base pairs per batch

Definition at line 90 of file input_thread.h.

InputStage::InputStage ( InputStageData *  data)

inline

constructor

Parameters

file	input sequence file
max_strings	maximum number of strings per batch
max_bps	maximum number of base pairs per batch

Definition at line 98 of file input_thread.h.

InputStage::InputStage ( io::SequenceDataStream *  file, const uint32  max_strings, const uint32  max_bps  )

inline

constructor

Parameters

file	input sequence file
max_strings	maximum number of strings per batch
max_bps	maximum number of base pairs per batch

Definition at line 57 of file input_thread.h.

Member Function Documentation

bool InputStage::process ( PipelineContext &  context)

inline

fill the next batch

Definition at line 65 of file input_thread.h.

bool InputStage::process ( PipelineContext &  context)

inline

fill the next batch

Definition at line 102 of file input_thread.h.

Member Data Documentation

InputStageData* InputStage::m_data

Definition at line 139 of file input_thread.h.

io::SequenceDataStream* InputStage::m_file

Definition at line 82 of file input_thread.h.

uint32 InputStage::m_max_bps

Definition at line 84 of file input_thread.h.

uint32 InputStage::m_max_strings

Definition at line 83 of file input_thread.h.

float InputStage::m_time

Definition at line 85 of file input_thread.h.

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The documentation for this struct was generated from the following files:

• E:/git/nvbio/nvLighter/input_thread.h
• E:/git/nvbio/nvSetBWT/input_thread.h