proposal.h File Reference

#include <nvBowtie/bowtie2/cuda/defs.h>
#include <nvbio/basic/cuda/arch.h>
#include <nvbio/basic/thrust_view.h>
#include <algorithm>

Go to the source code of this file.

Classes
struct	cufmi::bowtie2::cuda::HitReference< HitQueuesType >
struct	cufmi::bowtie2::cuda::ReadHitsIndex
struct	cufmi::bowtie2::cuda::ReadHitsIndexDeviceView
struct	cufmi::bowtie2::cuda::ReadHitsIndexDeviceView::HitArray
struct	cufmi::bowtie2::cuda::HitQueues
struct	cufmi::bowtie2::cuda::HitQueuesDeviceView
struct	cufmi::bowtie2::cuda::ScoringQueues
struct	cufmi::bowtie2::cuda::ScoringQueuesDeviceView
struct	cufmi::bowtie2::cuda::HitReference< HitQueuesType >
struct	cufmi::bowtie2::cuda::ReadHitsReference< ReadHitsIndexType, HitQueuesType >
struct	cufmi::bowtie2::cuda::ReadReference< ScoringQueuesType >

Namespaces
	cufmi
	cufmi::bowtie2
	cufmi::bowtie2::cuda