- c -

• check_match : deflate.c
• CHECK_VALUE : crc.h
• CLEAR_HASH : deflate.c
• Code : deflate.h
• COLLAPSE_ANY : synced_bcf_reader.h
• COLLAPSE_BOTH : synced_bcf_reader.h
• COLLAPSE_INDELS : synced_bcf_reader.h
• COLLAPSE_NONE : synced_bcf_reader.h
• COLLAPSE_SNPS : synced_bcf_reader.h
• COLLAPSE_SOME : synced_bcf_reader.h
• COMMENT_STATE : deflate.h
• COMPRESSION_SORTING : blockwise_sufsort.h
• const : zconf.h
• COPY : gzguts.h
• COPYLENGTH : lz4.c
• CRAM_1_VERS : cram_structs.h
• CRAM_2_VERS : cram_structs.h
• cram_aux : cram_structs.h
• cram_cigar : cram_structs.h
• CRAM_EXT_BA : cram_structs.h
• CRAM_EXT_IN : cram_structs.h
• CRAM_EXT_NAME : cram_structs.h
• CRAM_EXT_QUAL : cram_structs.h
• CRAM_EXT_REF : cram_structs.h
• CRAM_EXT_SC : cram_structs.h
• CRAM_EXT_TAG : cram_structs.h
• CRAM_EXT_TAG_S : cram_structs.h
• CRAM_EXT_TN : cram_structs.h
• CRAM_EXT_TS_NP : cram_structs.h
• CRAM_FDUP : cram_structs.h
• CRAM_FLAG_DETACHED : cram_structs.h
• CRAM_FLAG_MATE_DOWNSTREAM : cram_structs.h
• CRAM_FLAG_PRESERVE_QUAL_SCORES : cram_structs.h
• CRAM_FPAIRED : cram_structs.h
• CRAM_FPROPER_PAIR : cram_structs.h
• CRAM_FQCFAIL : cram_structs.h
• CRAM_FREAD1 : cram_structs.h
• CRAM_FREAD2 : cram_structs.h
• CRAM_FREVERSE : cram_structs.h
• CRAM_FSECONDARY : cram_structs.h
• CRAM_FUNMAP : cram_structs.h
• CRAM_KEY : cram_io.h
• CRAM_M_REVERSE : cram_structs.h
• CRAM_M_UNMAP : cram_structs.h
• CRAM_MAP : cram_structs.h
• CRAM_MAP_HASH : cram_structs.h
• cram_mstrand : cram_structs.h
• cram_name_len : cram_structs.h
• cram_qname : cram_structs.h
• cram_qual : cram_structs.h
• cram_seq : cram_structs.h
• cram_seqi : cram_structs.h
• cram_strand : cram_structs.h
• CRAM_SUBST_MATRIX : cram_structs.h
• CRC2 : inflate.c
• CRC32 : crc.h
• CRC4 : inflate.c
• CRC_FALSE : crc.h
• CRC_NAME : crc.h
• CRC_TRUE : crc.h
• CSS_KEY_PRUNING : prefix_doubling_sufsort.h