Here is a list of all namespace members with links to the namespace documentation for each member:

- s -

• s_phred_to_maq : nvbio::bowtie2
• s_solexa_to_phred : nvbio::bowtie2
• SAMFlag_AllSegmentsAligned : nvbio::io
• SAMFlag_Duplicate : nvbio::io
• SAMFlag_FailedQC : nvbio::io
• SAMFlag_FirstSegment : nvbio::io
• SAMFlag_LastSegment : nvbio::io
• SAMFlag_MultipleSegments : nvbio::io
• SAMFlag_NextSegmentReverseComplemented : nvbio::io
• SAMFlag_NextSegmentUnmapped : nvbio::io
• SAMFlag_ReverseComplemented : nvbio::io
• SAMFlag_SecondaryAlignment : nvbio::io
• SAMFlag_SegmentUnmapped : nvbio::io
• sample() : nvbio
• save_bns() : nvbio
• save_boundary() : nvbio::aln
• save_Mth() : nvbio::aln
• save_occurrences() : nvbio
• scan() : nvbio::cuda
• scan_test() : nvbio::cuda
• scan_total() : nvbio::cuda
• scan_warp() : nvbio::cuda
• scan_warp_total() : nvbio::cuda
• score_all() : nvbio::bowtie2::cuda
• score_all_t() : nvbio::bowtie2::cuda
• score_best() : nvbio::bowtie2::cuda
• score_best_t() : nvbio::bowtie2::cuda
• SCORE_MATE_BLOCKDIM : nvbio::bowtie2::cuda
• score_reduce() : nvbio::bowtie2::cuda
• score_reduce_kernel() : nvbio::bowtie2::cuda::detail
• score_reduce_paired() : nvbio::bowtie2::cuda
• score_reduce_paired_kernel() : nvbio::bowtie2::cuda::detail
• score_reduce_paired_t() : nvbio::bowtie2::cuda
• score_reduce_t() : nvbio::bowtie2::cuda
• SCORE_STREAM : nvbio::bowtie2::cuda::detail
• scoring_mode() : nvbio::bowtie2::cuda
• ScoringMode : nvbio::bowtie2::cuda
• SECOND_BEST_SCORE : nvbio::io
• select() : nvbio , nvbio::bowtie2::cuda
• select_all() : nvbio::bowtie2::cuda
• select_init() : nvbio::bowtie2::cuda
• select_init_t() : nvbio::bowtie2::cuda
• select_kernel() : nvbio::bowtie2::cuda
• select_multi() : nvbio::bowtie2::cuda
• select_multi_kernel() : nvbio::bowtie2::cuda
• select_n_from_top_range_kernel() : nvbio::bowtie2::cuda
• select_t() : nvbio::bowtie2::cuda
• SEMI_GLOBAL : nvbio::aln
• SEQUENCE_DATA : nvbio::io
• SEQUENCE_NAMES : nvbio::io
• SEQUENCE_QUALS : nvbio::io
• sequence_test() : nvbio
• SequenceDataDevice : nvbio::io
• SequenceDataHost : nvbio::io
• SequenceDataStream : nvbio::io
• SequenceDataView : nvbio::io
• SequenceEncoding : nvbio::io
• SequenceFlags : nvbio::io
• serial_assign() : nvbio::priv
• set() : nvbio
• setup() : nvbio
• sgn() : nvbio
• sift_down() : boost::heap::interval_heap_internal , nvbio::heap::interval_heap_internal
• sift_leaf() : boost::heap::interval_heap_internal , nvbio::heap::interval_heap_internal
• sift_leaf_max() : boost::heap::interval_heap_internal , nvbio::heap::interval_heap_internal
• sift_leaf_min() : boost::heap::interval_heap_internal , nvbio::heap::interval_heap_internal
• sift_up() : boost::heap::interval_heap_internal , nvbio::heap::interval_heap_internal
• simple_device_copy_kernel() : nvbio::priv
• SINGLE_END : nvbio::io
• SINK : nvbio::aln
• skip() : nvbio::io
• sm_broadcast : nvbio::cuda::wq
• smem_allocation_unit() : nvbio::cuda
• SmithWatermanMode : nvbio::bowtie2::cuda
• Solexa : nvbio::io
• sort() : divsufsortxx::substring , divsufsortxx::doubling , divsufsortxx::tandemrepeat
• sort_interval_heap() : boost::heap , nvbio::heap
• sort_typeBstar() : divsufsortxx::core
• SpmvTest() : mgpu
• STANDARD : nvbio
• State : nvbio::aln
• static_pointer_cast() : nvbio
• stats : nvbio::cuda::wq
• stats_string() : nvbio::alndiff
• store_deque() : nvbio::bowtie2::cuda::detail
• StoreBinaryMatrix() : mgpu
• stream : nvbio::cuda::wq
• stream_end : nvbio::aln
• STREAM_EVENT : nvbio::cuda
• stream_size : nvbio::cuda::wq
• stride : nvbio::aln
• string_2bit_be : nvbio::priv
• string_2bit_le : nvbio::priv
• string_4bit_be : nvbio::priv
• string_4bit_le : nvbio::priv
• string_8bit_be : nvbio::priv
• string_8bit_le : nvbio::priv
• string_batch_bound() : nvbio
• string_id() : nvbio
• STRING_ID : nvbio::priv
• string_id() : nvbio
• string_infix_coord_type : nvbio
• string_option() : nvbio
• string_prefix_coord_type : nvbio
• string_set_2bit : nvbio::priv
• string_set_2bit_be : nvbio::priv
• string_set_2bit_u64_be : nvbio::priv
• string_set_4bit : nvbio::priv
• string_set_8bit : nvbio::priv
• string_set_infix_coord_type : nvbio
• string_set_prefix_coord_type : nvbio
• string_set_suffix_coord_type : nvbio
• string_set_test() : nvbio
• string_suffix_coord_type : nvbio
• string_to_dna() : nvbio
• string_to_iupac16() : nvbio
• stringprintf() : mgpu
• style() : nvbio::html
• submatrices : nvbio::aln
• SUBSTITUTION : nvbio::aln
• SUFFIX_ID : nvbio::priv
• suffix_sort() : nvbio::cuda
• SuffixComponent : nvbio::priv
• sum_tree_test() : nvbio
• SW : nvbio::aln
• sw_alignment_score() : nvbio::aln::priv
• SW_BANDED : nvbio::aln
• SW_STRIPED : nvbio::aln
• SW_WARP : nvbio::aln
• swap() : nvbio::heap , std , nvbio , boost::container , nvbio , std
• symbol_range : nvbio::priv::wtree
• symbols_per_word() : nvbio::priv
• syncblocks_test() : nvbio
• syncthreads() : nvbio::cuda